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Efficient and automated large scale detection of structural relationships in proteins with a flexible aligner

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Table 1 Performance benchmark analysis of MOMA with different methods
Fig. 2 Example of a rigid body shift caused by the rearrangement of two structural domains upon ligand binding
Fig. 4 Example of a complex structural re-arrangement. Structural superposition with MOMA of proteins Sec31 of the COPII complex of coat vesicle (the query; PDB code 2QX5, chain A) and the nucleoporin Nic96 (the target; PDB code 2PM7, chain A)

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