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A framework for genomic sequencing on clusters of multicore and manycore processors

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Academic year: 2020

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Table 1 provides a survey of recent high performance aligners, including those targeted in our work, for  multi-threaded architectures
Figure 2. Message-passing fusion of the meta-exon and detected splice junctions structures.
Figure 3. Operation of the generic-aligner framework (without a second stage). The aligner underlying each MPI rank is executed after its part of the input dataset has been written to disk
Figure 4. Operation of the generic-aligner framework (without a second stage), and with “parallel” retrieval of the input file and concurrent merge of the local results with the mapping process
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