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Supplementary Figure 1

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(1)

NeuN (A)

PI A PI A

PI A

a b

c

e f

g

d

2C

4C

4C 2C

Epilepsy Control

Epilepsy Control h

S100β+

NeuN-

S100β+

NeuN+

S100β- NeuN-

S100β- NeuN+

S100β+

NeuN-

S100β+

NeuN+

S100β- NeuN-

S100β- NeuN+

S 10 0 β (A ) S 10 0 β (A )

NeuN (A)

S S C A

FSC A

S S C A

PI A PI A

P I H P I W

(2)

IP+ -E 12 H AF 488+AF 647+IP_34

AF488+

AF488+

AF488+

AF488+

AF488+

AF488+

1e5 1e6

1e4

Intensity_MC_Ch02-AF 488 1,2

0,9

0,3 1,5

0,6

0

Normalized Frequency

Intensity_MC_Ch02-AF 488

Population Count %Gated Mean CV

IP+ & Cells & Single & Focus 455 100 103628,62 120,4

AF488+ & IP+ & Cells & Single & Focus 359 78,9 119235,96 91

AF488+ -E 12 H AF 488+AF 647+IP_34

Neuron 4c Neuron 4c Neuron 4c Neuron 4c Neuron 4c Neuron 4c

2e5 4e5

Intensity_MC_Ch05-IP 2

1 3

0

Normalized Frequency

Intensity_MC_Ch05-IP

Population Count %Gated Mean CV

AF488+ & IP+ & Cells & Single & Focus 359 100 238466,81 27,11 Neuron 4c & AF488+ & IP+ & Cells & Single & Focus 19 5,29 427290,32 2,528

IP+ -E 12 H AF 488+AF 647+IP_34

AF647+

AF647+

AF647+

AF647+

AF647+

AF647+

1e6 1e5

1e4

Intensity_MC_Ch11-AF 647 1

2

1,5

0,5

0

Normalized Frequency

Intensity_MC_Ch11-AF 647

Population Count %Gated Mean CV

IP+ & Cells & Single & Focus 455 100 1265970,65 54,98

AF647+ & IP+ & Cells & Single & Focus 447 98,2 1230183,3 52,58

AF647+ -E 12 H AF 488+AF 647+IP_34

Astroc 4c Astroc 4c Astroc 4c Astroc 4c Astroc 4c Astroc 4c

4e5 2e5

Intensity_MC_Ch05-IP 2

1 3

0

Normalized Frequency

Intensity_MC_Ch05-IP

Population Count %Gated Mean CV

AF647+ & IP+ & Cells & Single & Focus 447 100 230440,03 25,77 Astroc 4c & AF647+ & IP+ & Cells & Single & Focus 27 6,04 423407,33 4,869

No rmaliz ed F requ ency No rmaliz ed F requ ency No rmaliz ed F requ ency No rmaliz ed F requ ency

e f

h g

647+IP_34

Cells Cells Cells Cells Cells Cells

600

0 300

Area_M09 1e7

1e4 1e5 1e6

Intensity_MC_Ch06

Area_M09, Intensity_MC_Ch06

Population Count %Gated Mean CV

Single & Focus 1638 100 173,89, 684360,74 36,54, 139,27 Cells & Single & Focus 822 50,2 178,7, 134513,57 31,25, 63,96 a

2 1

2 1

NeuN PI

Bright field

NeuN PI

Bright field b

c d

No rmaliz ed F requ ency

Area_M 09

Area_M 01

Gradient RMS M01 Channel 01

A spect Rat io_M 01 Int ensit y _M C -Ch ann el 06

NeuN-Alexa 488 DNA content PI

DNA content

S100β-Alexa 647

(3)

PercentageoftetraploidNDRG2+ astrocytes c a

Percentageof tetraploidNeuN+ neuronsPercentageof tetraploidcells

p= 0.577

EZ CSZ

EZ CSZ

EZ CSZ

EZ CSZ

EZ CSZ

p= 0.197

p= 0.502 p= 0.497

p= 0.497 e

PercentageoftetraploidS100β+ astrocytes b

d

PercentageoftetraploidCTIP2+ neurons

(4)

p = 0.965

c

a b

d

Percentageof tetraploidcells

Percentageof tetraploidcells

Control Epilepsy Control EZ

Percentageof tetraploidcells Percentageof tetraploidcells

Control CSZ Control Epilepsy

p = 0.048

p = 0.212 p = 1.000

*

(5)

p = 0.185

c

a b

Percentageoftetraploidneurons

Percentageoftetraploidneurons

Control Epilepsy Control EZ

Percentageoftetraploidneurons

Control CSZ

p = 0.429

p = 0.400

(6)

p = 0.051

Control Epilepsy Control EZ

Control CSZ Control Epilepsy

p = 0.905

p = 0.152

p = 0.133

Percentageof tetraploidastrocytes

Percentageof tetraploidastrocytesPercentageof tetraploidastrocytes Percentageof tetraploidastrocytes

a b

c d

(7)

% 4C S100β Hippocampus

% 4C NeuN Cortex

% 4C S100β Cortex

% 4C NeuN Amydala

% 4C S100β Amygdala

Nº Anticonvulsant drugs

Onset Age

% 4C S 10 0 β Hip p o ca mp u s

% 4C NeuN Co rt ex

% 4C S 10 0 β Co rt ex

% 4C NeuN A my d ala

% 4C S 10 0 β A my g d ala

A n ticon v u lsa n t d ru g s

O n se t A g e % 4C NeuN Hip p o ca mp u s

Age

% 4C S 10 0 β Hip p o ca mp u s

% 4C NeuN Cor te x

% 4C S 10 0 β Co rt ex

% 4C NeuN A my d ala

% 4 C S 1 0 0 β A my g d ala % 4C NeuN Hip p o ca mp u s

Number of seizures

a

b

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