Now I need to estimate the predictive value of the ten common genes using Random Forest in R, anyone knows how the data frame should be?
Hi,
I have RNAseq matrix counts for two datasets. I conducted DEGs then the intersection between DEGs lists was done. Now I need to estimate the predictive value of the ten common genes using Random Forest in R, anyone knows how the data frame should be? Colunms= ten genes
Rows = case and controls?
Replies
When you conducted the DEGs, have you got any p-values? What method do you use? Is it DESeq2 for example.
Wisam Saleem yeah I used DESeq2, and it includes the p-value in the results
Hiba Almaadanli. OK, I think I have the codes for this exactly by random forest algorithm. I can't put it in public because it's related to private repository for research paper.
Wisam Saleem Thanks, I have sent a message to you
