gene expression signatures
Breast cancer biomarker discovery in the functional genomic age: A systematic review of 42 gene expression signatures
... the gene meta-signature with a single data set of 295 breast cancer samples and integration with 4 pronostic or predictive gene expression ...(orange). Gene ontology clustering (left of the ...
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A machine learning approach to predict gene expression signatures, local gene networks, and key genes for biological functions of interest
... signature gene ! " predicts gene ! E with a confidence above some given and fixed confidence ...each expression signatures, so that they are differentially expressed and have a high ...
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Gene Expression Profiles Distinguish Idiopathic Pulmonary Fibrosis from Hypersensitivity Pneumonitis
... disease gene expression signature, and the biological plausibility of the results, it is unlikely that larger numbers of samples will change our conclusions ...disease-specific gene expression ...
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Apolipoprotein D alters the early transcriptional response to oxidative stress in the adult cerebellum
... interesting gene specifically up-regulated in PQ-challenged ApoD-KO cerebellar arrays is Protein kinase Cd ...Pkcd expression is seen in ApoD-KO astrocytes ...
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Economic significance of aflatoxin contamination
... Biosynthesis of aflatoxin is a highly complex pro- cess governed by genes maintained in a cluster. Transcriptional regulation is controlled by a protein enco- ded by aflR. Chromosomal position effects, as well as a ...
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The expression level of BAALC-associated microRNA miR-3151 is an independent prognostic factor in younger patients with cytogenetic intermediate-risk acute myeloid leukemia.
... differential expression correlated with miR-3151 expression, data obtained from our previously identi fi ed miRNA pro fi le 10 were analyzed using BRB Array Tools version ...
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Immune signatures and disorder-specific patterns in a cross-disorder gene expression analysis.
... 34 Expression differences in cytokines have been shown to differentiate patients with MDD from ones with bipolar disorder and controls 35 and studies have shown regulation of the serotonin receptor through ...
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DNMT3B modulates the expression of cancer-related genes and downregulates the expression of the gene VAV3 via methylation
... the expression of SORBS2 and GPR137 ...the expression decrease of the VAV3 gene in HaCaT cells with overexpression of ...the expression of SORBS2 and GPR137 genes, but the methylation of its ...
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Effects of gene expression noise on phenotype and cooperate-defect fitness
... that gene repression or activation generate the lack or expression of a phenotype ...on gene expression level , but this is an incorrect con- ...of gene expression with optimal ...
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Hierarchical information representation and efficient classification of gene expression microarray data
... analyze expression of many genes in a single experiment quickly and ...high gene expression level, while blue values indicate low gene expression ...
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Expresión del Microrna-16-1 y CCNE1 y su relación con la integración de los VPH-AR en la carcinogénesis cervical
... CCNE1 expression is frequently up regulated, and is an indicator for poor outcome in squamous cell carcinomas ...CCNE1 gene is regulated by miR-16-1 in CC ...miR-16-1 expression in cell lines derived ...
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Kinetics of the inflammatory response induced by free fatty acid accumulation in hepatocytes
... Real time quantitative PCR was performed on an i-Cycler IQ, 18S rRNA and β -actin were used as housekeeping genes. All primer pairs were synthesi- zed by Sigma Genosys Ltd. (Haverhill, UK) and were designed using the ...
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Identification of novel transcripts with differential dorso ventral expression in Xenopus gastrula using serial analysis of gene expression
... 'hierarchical gene assignment' described for yeast [31], in this work we did not classify the tags into dif- ferent confidence types because many of the tags have multi- ple genomic occurrences (only ...
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... Mi-1 gene and it is the only commercially available source of resis- tance to these nematodes in the ...Mi-1 gene encodes a 1257 amino acid protein and has three exons (two are translated to ...
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SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation
... graphic expression maps facilitate the analysis of SAGE data and allow the easy and fast identification of transcriptionally active regions or co-regulated gene clusters under certain experimental ...
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A robust blood gene expression-based prognostic model for castration-resistant prostate cancer.ar
... the gene ex- pression level of TMEM66 (overexpressed in T cells) and lymphocyte count (Additional file 1: Figure S6A, Pearson ’ s correlation coefficient = ...TMEM66 gene expression level predicted ...
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Depletion of abscisic acid levels in roots of flooded Carrizo citrange (Poncirus trifoliata L Raf x Citrus sinensis L Osb ) plants is a stress specific response associated to the differential expression of PYL/PYR/RCAR receptors
... overrepresented Gene Ontology (GO) categories, followed by ‘Hormone signaling and metabolism’, including abscisic acid, gibberellin and ...several gene orthologues encoding different hemoglobins were ...
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Insights into malassezia fufur phenotypic variation through the differential expression of Mgl_3612 allergen
... differential gene expression of Mgl_3612 allergen between ...Differential gene expression was evaluated through qRT-‐PCR analysis, as a way to confirm results from a previous microarray ...
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Prognostic value of a high level of circulating endothelial cells in patients with HER2-recurrent or metastatic breast cancer treated with bevacizumab in combination with paclitaxel and gemcitabine as fi rst-line therapy
... altered expression has signifi cant consequences in ...in gene expression, usually mild and with consequences for a vast number of target protein coding ...erential expression of ncRNAs in ...
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ABSTRACT
... replicates of untreated, IFN-α2b- treated, IFN-γ- treated and HeberFERON - treated cell samples; two replicates of cDNA reactions (from 1μg of total RNA) from each and three tech- nical replicates. As a result, we had 12 ...
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