genome sequencing
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Disseny d'una aplicació web per a la integració, visualització i anàlisi de les dades genòmiques obtingudes del projecte Pan Cancer Whole Genome Sequencing (PCAWGS)
... (Whole Genome Sequencing o WGS) i d’expressió gènica (RNA sequencing o RNAseq), amb la intenció d’explorar la naturalesa i les conseqüències de les variacions somàtiques i germinals, tant a regions ...
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New seed collections of North American pitseed goosefoot (Chenopodium berlandieri) and efforts to identify its diploid ancestors through whole-genome sequencing
... A genome is found in a large number of diploids in the Americas, along with one Northeast Asian taxon, and was recently shown to be the maternal ancestor, while the paternal B genome is closely related to ...
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Forward genetics by genome sequencing uncovers the central role of the aspergillus niger goxB locus in hydrogen peroxide induced glucose oxidase expression
... draft genome sequence using a hybrid of Illumina and PacBio RS II sequencing, and subsequently mapped NW103 Illumina reads against the scaffolds, while focusing on linkage group ...the sequencing and ...
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Genome sequencing provides new insights into metabolic versatility of lysinibacillus sphaericus - a novel approach in effective degradation of aromatic hydrocarbons
... Two L. sphaericus strains (2362 and OT4b.31) were selected from the culture collection of the Centro de Investigaciones Microbiológicas (CIMIC) at the Universidad de los Andes (Bogotá, Colombia). Strain 2362 was isolated ...
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Noninvasive chromosome screening of human embryos by genome sequencing of embryo culture medium for in vitro fertilization
... on sequencing the genomic DNA secreted into the culture medium from the human ...next-generation sequencing (NGS) on the spent culture medium used to culture human blastocysts ( n = 42) and obtained the ...
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Transcriptomics using next generation sequencing technologies
... Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, ...
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008. Sequencing ancient and modern genomes
... Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie ...
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Protecting privacy and family life in the era of recreational genetics and big data
... Among the regulations needed are the importance of the medical context for performing genetic tests, including whole genome sequencing; the need to consider family members in the informe[r] ...
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Holliday2019 Genotyping Sequencing pdf
... using sequencing platforms currently ...of sequencing chemistries and instruments have flattened this curve ...whole-genome sequencing becoming comparable with that of genome ...
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Whole Sequencing of the Mitochondrial Genome of Breast Cancer Tissue in Mexican Mestizo Postmenopausal Women with Different Body Mass Index
... a high sensitivity and accuracy needed for reliable, whole mitochondrial genome sequencing. Moreover, we observed that women with breast cancer and a normal BMI had more somatic mutations in genes that ...
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Pan genome of the phytoplankton Emiliania underpins its global distribution
... Contributions Genome sequencing was performed by the US DOE ...JGI sequencing/analysis; ...Illumina sequencing of 13 additional strains; ...performed genome and transcriptome analyses; ...
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Scandinavium goeteborgense gen nov , sp nov , a New Member of the Family Enterobacteriaceae Isolated From a Wound Infection, Carries a Novel Quinolone Resistance Gene Variant
... next-generation sequencing and whole genome sequencing (WGS) analysis has significantly impacted the taxonomic classification of Enterobacteriaceae ...whole genome-based phylogeny and ...
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The study of biodiversity in the era of massive sequencing
... a genome sequencing ...end sequencing by Illumina with at least 20X ...reliable genome project should be planned with the aim of producing deep coverage (30X) in paired-end sequences from ...
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Evidence of selection on human genome
... In this review, we highlight some of the types of nat- ural selection and their effects on the patterns of DNA variation in the human genome. We explain the relative strengths and weaknesses of the strategies that ...
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Tamaño genómico de especies acuáticas de importancia económica y biológica en el Estado de Baja CaliforniaGenome size of aquatic animal of economic and biological importance in Baja California
... on genome size along with genetic analysis have contributed greatly in many areas of natural sciences (Kron et ...on genome size have been used to assist aquaculture and plan managements for aquatic ...
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Biomedical dimensions on human genome research
... human genome constitutes a major ...human genome will certainly exert a driving force on both medical research and practice in the ...human genome has also increased public awareness concerning the ...
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The Ectocarpus genome and the independent evolution of multicellularity in brown algae
... cDNA sequencing were carried out using the Ectocarpus siliculosus strain Ec 32, which is a meiotic offspring of a field sporophyte collected in 1988 in San Juan de Marcona, ...The genome sequence was ...
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Life cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton
... CCMP1516 genome might be consistent with long-term absence of ...JGI genome assembly of CCMP1516 occurred on pairs of highly homologous and syntenic scaffolds that JGI identi- fied as probably representing ...
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Added Value of Deep Sequencing Relative to Population Sequencing in Heavily Pre-Treated HIV-1-Infected Subjects.
... deep sequencing detected low-frequency mutations unrecognized by Sanger sequencing in 19 out of 22 antiretroviral–experienced individuals experiencing virological failure in routine HIV care between ...454 ...
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Klebsiella variicola y Klebsiella quasipneumoniae con capacidad para adaptarse al ambiente clnico y a las plantas
... In silico screening of 84 virulence-determinant proteins in reported genomes of K. variicola, K. quasipneumoniae and K. pneumoniae showed a mosaic distribution in dif- ferent isolates (table I). Most (>98%, except for ...
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