Protein structure prediction
Top PDF Protein structure prediction:
All atom knowledge based potential for RNA structure prediction and assessment
... the Protein Data Bank (PDB) has rapidly increased over the past few years, reaching now over 1800 structures (Berman et ...assessment, prediction and comparison of RNA structures have been recently ...
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Contact map prediction based on cellular automata and protein folding trajectories
... native structure of a protein determines the biological function that it will fulfill, and for this reason, it is necessary to know this ...near-native structure for a protein from its amino ...
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A Composite Score for Predicting Errors in Protein Structure Models
... in protein structure prediction (Baker and Sali 2001; Ginalski et ...native structure (Shortle et ...known protein structures and quantify the observed conformational preferences of ...
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TítuloLECTINPred: web server that uses complex networks of protein structure for prediction of lectins with potential use as cancer biomarkers or in parasite vaccine design
... explore protein structures53 are good examples in this ...a protein represents a set of discrete numbers that is derived from its amino acid sequence and that is different from the classical amino acid ...
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ARCIMBOLDO, a supercomputing method for crystallographic ab initio protein structure solution below atomic resolution
... values. Protein or peptide structures of small size can not be solved by direct methods in the absence of atomic ...each structure, data resolution depends on the diffraction experiment and is thus con- ...
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THEIR CORRELATION WITH CHEMICAL STRUCTURE; THEIR NUMERICAL ESTIMATION AND PREDICTION FROM ADDITIVE GROUP CONTRIBUTIONS
... the structure of crystalline polymers there is only room for the fringed micelle model when polymers of low crystallinity are ...a structure involving “paracrystals” and discrete amorphous regions seems ...
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Functional study of potential sHSPs in Arabidopsis and tomato under environmental stress
... an important role in the transcription initiation. Furthermore, numerous stress-related elements were located in the identified BDPs. The low responsive LTREATLTI78 and LTRECOREATCOR15 elements were predicted in the ...
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From sequence to structure: determinants of functional and non-functional. Protein aggregation
... secondary structure but a rudimentary tertiary structure with significant exposure of hydrophobic ...the protein in the absence and presence of the cosolvent suggests that this effect is exerted ...
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Snowpack assessment and avalanche forecasting tools
... • Prediction support as snow and meteorological episodes database Prediction support as snow and meteorological episodes database Prediction support as snow and meteorological episodes[r] ...
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Environmental toxicity prediction using computational tools: prediction of potential hazardous effects of chemicals in Lactuca sativa seed germination
... within the domain of applicability may be considered reliable. In this work we use the leverage (h) and standardized residual approach, described in the literature [42]. The Figure 4 shows the graph of William for the ...
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TítuloMembrane bound class III peroxidases: unexpected enzymes with exciting functions
... Abstract: Class III peroxidases are heme-containing proteins of the secretory pathway with a high redundance and versatile functions. Many soluble peroxidases have been characterized in great detail, whereas only a few ...
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Biochemical and structural characterization of Mycoplasma genitalium proteins MG438 and MG200
... Restriction-Modification (R-M) systems are varied and widespread in prokaryotes and arose early in their evolution. They are multi-component systems with the ability to degrade foreign DNA (restrict) and methylate ...
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canales de cloro activados por calcio
... in protein structure and ligand binding (for example, ...of protein structures indicates that it commonly occurs, for instance where an aspartate interacts with the edge of a phenylalanine 41–43 ...
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Estudi de la regulació transcripcional del gen de CD69
... Hypersensitive sites (HSs) are genomic regions that present increased sensitivity to cleavage by DNase I as a result of altered nuclesomal structure and commonly correspond to cis-acting regulatory elements (Gross ...
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Shaking table tests of structures with hysteretic dampers: experimental results vs. prediction using non-linear static methods
... The maximum response of the structure with dampers in terms of lateral displacement and base shear obtained from the tests was compared with the prediction pro- vided by three well-know[r] ...
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Analysis of the functional roles of Mammary Serum Amyloid A3 protein
... M‐SAA3 protein increased the number of active milk and blood macrophages and their phagogytic capacity, which is consistent with results reported for serum SAA forms (Hari‐Dass et ...M‐SAA3 protein ...
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PART1:INTRODUCTION 1 HOWA META.ANALYSIS WORKS
... Prediction intervals in primary studies 127 Prediction intervals in meta-analysis 129 Confidence intervals and prediction intervals 131 Comparing the confidence interval with the predict[r] ...
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Cycling Dof Factors: Molecular and functional characterization of Arabidopsis thaliana AtCDF3 and tomato (Solanum lycopersicum L.) SlCDF3 in response to abiotic stress
... To investigate the subcellular localization of SlCDF proteins, translational fusions of their corresponding ORFs to the C-terminus of GFP were made. These constructs, driven by the 35S promoter, were used in transient ...
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Prediction of Protein Oxidation Sites
... of protein functions and cellular processes has recently encouraged proteomic ...computational prediction of phosphorylation sites has emerged as a popular alternative ...oxidation prediction exist ...
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TítuloMI NODES multiscale models of metabolic reactions, brain connectome, ecological, epidemic, world trade, and legal social networks
... In the 1980s, Broto & Moreau applied an autocorrelation function to the molecular graph in order to measure the distribution of atomic properties on the molecular topology. This measure was called Autocorrelation of ...
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