Whole genome sequencing
New seed collections of North American pitseed goosefoot (Chenopodium berlandieri) and efforts to identify its diploid ancestors through whole-genome sequencing
... through whole-genome ...A genome is found in a large number of diploids in the Americas, along with one Northeast Asian taxon, and was recently shown to be the maternal ancestor, while the paternal B ...
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Disseny d'una aplicació web per a la integració, visualització i anàlisi de les dades genòmiques obtingudes del projecte Pan Cancer Whole Genome Sequencing (PCAWGS)
... (Whole Genome Sequencing o WGS) i d’expressió gènica (RNA sequencing o RNAseq), amb la intenció d’explorar la naturalesa i les conseqüències de les variacions somàtiques i germinals, tant a ...
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Protecting privacy and family life in the era of recreational genetics and big data
... Among the regulations needed are the importance of the medical context for performing genetic tests, including whole genome sequencing; the need to consider family members in the informe[r] ...
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Holliday2019 Genotyping Sequencing pdf
... using sequencing platforms currently ...of sequencing chemistries and instruments have flattened this curve ...of whole-genome sequencing becoming comparable with that of genome ...
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The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
... almost exclusively in marine environments, particularly rocky coastlines in temperate regions of the globe. Brown algae are often the main primary producers of such ecosystems and therefore play an important ecological ...
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Draft genome sequence of chloride tolerant Leptospirillum ferriphilum Sp Cl from industrial bioleaching operations in northern Chile
... The draft genome size is 2,475,669 nucleotides, with an average G + C content of 54.41 % (Table 3). From a total of 2,882 genes, 2,834 were protein coding genes and 48 are RNA genes. A total of 41.83 % of the ...
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The study of biodiversity in the era of massive sequencing
... Brandon, Y. H. Rogers, R. G. Blazej, M. Champe, B. D. Pfeiffer, K. H. Wan, C. Doyle, E. G. Baxter, G. Helt, C. R. Nelson, G. L. Gabor, J. F. Abril, A. Agbayani, H. J. An, C. Andrews-Pfannkoch, D. Baldwin, A. Basu, J. ...
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ENTRA: Whole-systems energy transparency
... As with energy models, analysis can be performed on program representations at different levels in the software stack, ranging from source code (in different program ming language[r] ...
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Transcriptomics using next generation sequencing technologies
... Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, ...
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Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile
... the genome of the type strain of the species (ATCC 19377) and the publically available draft genomes of nine additional strains using the sequence based comparison tools of RAST [36, ...core genome, and ...
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Clinical Applications of Next Generation Sequencing
... in sequencing costs boosted by chemistries optimization and sample multiplexation has resulted in an immense growth within the field of next-generation sequencing (NGS) in the last ...
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Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies
... We wish to thank Claudia Rosales for the tremendous amount of work she did in the laboratory; Jamie Walters and Chris Jiggins for contributing sequencing data; and Chris Smith for computational support. We thank ...
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Sequencing ancient RNA in bioarchaeology - Review
... (SMRT) sequencing, derived from former Nanofluidics ...(cPAL) sequencing, based on Sequencing by Hybridization (SbH) and Sequencing by Ligation (SbL), which is offered as AllSeq ...
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The Ectocarpus genome and the independent evolution of multicellularity in brown algae
... Ectocarpus genome illustrate how the evolu- tionary fates of eukaryotic lineages have probably depended not only on the evolution of new gene functions but also on the retention of genes already present in ...
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Added Value of Deep Sequencing Relative to Population Sequencing in Heavily Pre-Treated HIV-1-Infected Subjects.
... HIV-1 sequencing and changes in predicted phenotypic suscep- tibility, relative to population sequencing a, b, c ...deep sequencing; PI: protease inhibitor; NRTI: nucleoside reverse transcriptase ...
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Klebsiella variicola y Klebsiella quasipneumoniae con capacidad para adaptarse al ambiente clnico y a las plantas
... In silico screening of 84 virulence-determinant proteins in reported genomes of K. variicola, K. quasipneumoniae and K. pneumoniae showed a mosaic distribution in dif- ferent isolates (table I). Most (>98%, except for ...
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Tamaño genómico de especies acuáticas de importancia económica y biológica en el Estado de Baja CaliforniaGenome size of aquatic animal of economic and biological importance in Baja California
... El tamaño genómico o valor C, es toda la cantidad de DNA en un set genómico haploide, el cual es expresado en picogramos (pg). El tamaño genómico es una de las características celulares más analizadas que permite ...
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Aislamiento y caracterización genómica de bacteriófagos específicos contra Propionibacterium acnes
... Genome sequence and analysis of a Propionibacterium acnes bacteriophage.[r] ...
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The evolving concept of the gene
... b) Intervening sequences: most eukaryotic genes are interrupted by non- protein coding sequences called introns, which are transcribed into RNA and thereafter removed prior to translation. Removal of introns and joining ...
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Comparative Analysis of de Bruijn Graph Parallel Genome Assemblers
... Comparative Analysis of de Bruijn Graph Parallel Genome Assemblers Introduction Genome Assemblers and De Bruijn Graphs Experimental Results and Analysis Conclusions and Future Work Comparative Analysi[.] ...
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