11. ESTUDIO DE DESASTRES Y/O RIESGOS DEL PROYECTO
11.1 Análisis de amenazas
At first glance, the networks derived here appear to be variable in gene composition, hub gene identity (Figure 4), and the overall interactions they describe (Figures 1-3). This apparent lack-of-convergence onto a single co-citation network, despite them
being inferred from essentially similar datasets (Table 1) suggests that honey bee workers can use different networks to control personal reproduction, perhaps as a function of age, environmental circumstance, or both. Given that workers use different sensory modalities to interact with and respond to changes in their environment, including their social environment (Tanaka and Hartfelder 2004; Cardoen et al. 2011a), it is conceivable that workers may use alternate or redundant pathways to control aspects of reproduction within colonies. Alternatively, a single pathway governing ovary activation in response to social cues seems more parsimonious (Amdam et al. 2006; Toth and Robinson 2007). If so, the multiple networks inferred here may represent segments of the larger, complete network that is still unknown. Different social and environmental signals may activate different suites of genes within this comprehensive network, explaining why the studies that vary in age, pheromone treatment, social structure, and environmental conditions have all captured different gene sets, with some degree of overlap.
The networks identified here represent hypotheses for how workers regulate their ovaries to control reproduction. Within the context of their eusocial colonies, this reproductive machinery is of direct significance to sociogenomic theory that postulates the existence of ‘genes for altruism’ (Hamilton 1963; Dawkins 1976). These genes have rarely been found (Thompson et al. 2013) but the networks presented here, together with other efforts to describe how genes interact with each other and with their cellular, physical and social environment (Bloch and Grozinger 2011; Wang et al. 2012), provide a starting point from which I can begin to test ideas
on the role of specific genes on reproductive phenotypes, including the prospect of finding genes for worker sterility. One approach might be to use functional genomic experiments that perturb hub genes or their neighbours, and then monitor worker phenotype. In particular it will be useful to measure how knock-outs affect worker phenotypes related to reproduction, including response to queen mandibular pheromone, ovary activation and egg laying, as well as other measures of social divisions in labour such as nurse-to-forager transitions or forager specializations. Finally, I suggest that future studies incorporate co-expression information and honey bee protein interactions, so that networks can then be made from Apis genes directly without the need for conversion to Drosophila, and would not rely on the somewhat haphazard availability of co-citation data in PubMed. The presence of the dopamine, insulin, and ecdysteroid signaling pathways suggests that gene interaction studies will play an important role in uncovering the main endocrine and neuronal control mechanisms that ultimately regulate ovarian physiology and altruistic behaviour in honey bee workers.
References
Abbot P, Abe J, Alcock J et al. 2011. Inclusive fitness theory and eusociality. Nature 471:E1-E4.
Alaux C, Le Conte Y, Adams HA, Rodriguez-Zas S, Grozinger CM, Sinha S, Robinson GE. 2009. Regulation of brain gene expression in honey bees by brood pheromone. Genes Brain Behav 8:309-319.
Amdam GV, Csondes A, Fondrk MK, Page RE. 2006. Complex social behaviour derived from maternal reproductive traits. Nature 439:76-78.
Amdam GV, Norberg K, Fondrk MK, Page RE. 2004. Reproductive ground plan may mediate colony-level selection effects on individual foraging behavior in honey bees. Proc Natl Acad Sci USA 101:11350-11355.
Ament SA, Corona M, Pollock HS, Robinson GE. 2008. Insulin signaling is involved in the regulation of worker division of labor in honey bee colonies. Proc Natl Acad Sci USA 105:4226-4231.
Backx AG 2011. Genetic components to worker sterility in the honey bee. [MSc thesis, London]: The University of Western Ontario.
Backx AG, Guzman-Novoa E, Thompson GJ. 2012. Factors affecting ovary activation in honey bee workers: a meta-analysis. Insectes Sociaux 59:381-388. Bairoch A, Bougueleret L, Altairac S, Amendolia V, Auchincloss A, Puy GA. 2007. The universal protein resource (UniProt). Nucleic Acids Res 35:D193-D197.
Barabasi AL, Oltvai ZN. 2004. Network biology: understanding the cell's functional organization. Nat Rev Genet 5:101-113.
Barchuk AR, Cristino AS, Kucharski R, Costa LF, Simoes ZLP, Maleszka R. 2007. Molecular determinants of caste differentiation in the highly eusocial honeybee Apis mellifera. BMC Dev Biol 7:70.
Barron AB, Robinson GE. 2008. The utility of behavioral models and modules in molecular analyses of social behavior. Genes Brain Behav 7:257-265.
Beggs KT, Glendining KA, Marechal NM, Vergoz V, Nakamura I, Slessor KN, Mercer AR. 2007. Queen pheromone modulates brain dopamine function in worker honey bees. Proc Natl Acad Sci USA 104:2460-2464.
Beggs KT, Mercer AR. 2009. Dopamine receptor activation by honey bee queen pheromone. Curr Biol 19:1206-1209.
Berriz GF, King OD, Bryant B, Sander C, Roth FP. 2003. Characterizing gene sets with FuncAssociate. Bioinformatics 19:2502-2504.
Bloch G, Grozinger CM. 2011. Social molecular pathways and the evolution of bee societies. Philos T Roy Soc B 366:2155-2170.
Bourke AFG. 2011. Principles of social evolution. Oxford: Oxford University Press. Brembeck FH, Rosario M, Birchmeier W. 2006. Balancing cell adhesion and Wnt signaling, the key role of beta-catenin. Curr Opin Genet Dev 16:51-59.
Brody T. 1999. The interactive fly: gene networks, development and the internet. Trends Genet 15:333-334.
Cardoen D, Ernst UR, Boerjan B, Bogaerts A, Formesyn E, de Graaf DC, Wenseleers T, Schoofs L, Verleyen P. 2012. Worker honeybee sterility: a proteomic analysis of suppressed ovary activation. J Proteome Res 11:2838-2850.
Cardoen D, Ernst UR, Van Vaerenbergh M, Boerjan B, de Graaf DC, Wenseleers T, Schoofs L, Verleyen P. 2011a. Differential proteomics in dequeened honeybee colonies reveals lower viral load in hemolymph of fertile worker bees. Plos One 6. Cardoen D, Wenseleers T, Ernst UR, Danneels EL, Laget D, De Graaf DC, Schoofs L, Verleyen P. 2011b. Genome-wide analysis of alternative reproductive phenotypes in honeybee workers. Mol Ecol 20:4070-4084.
Chen H, Sharp BM. 2004. Content-rich biological network constructed by mining PubMed abstracts. BMC Bioinformatics 5:147.
Clough E, Moon W, Wang SX, Smith K, Hazelrigg T. 2007. Histone methylation is required for oogenesis in Drosophila. Development 134:157-165.
Cristino AS, Nunes FMF, Lobo CH et al. 2006. Caste development and reproduction: a genome-wide analysis of hallmarks of insect eusociality. Insect Mol Biol 15:703- 714.
Dawkins R. 1976. The selfish gene. Oxford: Oxford University Press.
Drapeau MD, Albert S, Kucharski R, Prusko C, Maleszka R. 2006. Evolution of the yellow/major royal jelly protein family and the emergence of social behavior in honey bees. Genome Res 16:1385-1394.
Eichinger L, Pachebat JA, Glockner G, Rajandream MA, Sucgang R, Berriman M. 2005. The genome of the social amoeba Dictyostelium discoideum. Nature 435:43-57. Evans JD, Aronstein K, Chen YP et al. 2006. Immune pathways and defence
mechanisms in honey bees Apis mellifera. Insect Mol Biol 15:645-656. Evans JD, Wheeler DE. 2001. Expression profiles during honeybee caste determination. Genome Biol 2.
Flatt T, Tu MP, Tatar M. 2005. Hormonal pleiotropy and the juvenile hormone regulation of Drosophila development and life history. Bioessays 27:999-1010. Frisch M, Klocke B, Haltmeier M, Frech K. 2009. LitInspector: literature and signal transduction pathway mining in PubMed abstracts. Nucleic Acids Res 37:W135-140. Fu C, Whitfield CW. 2012. Genes associated with honey bee behavioral maturation affect clock-dependent and -independent aspects of daily rhythmic activity in fruit flies. Plos One 7.
Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, Smith CR, Suen G, Wurm Y, Smith CD. 2012. The genomic impact of 100 million years of social evolution in seven ant species. Trends Genet 28:14-21.
Grigorov MG. 2005. Global properties of biological networks. Drug Discov Today 10:365-372.
Grozinger CM, Fan YL, Hoover SER, Winston ML. 2007. Genome-wide analysis reveals differences in brain gene expression patterns associated with caste and reproductive status in honey bees (Apis mellifera). Mol Ecol 16:4837-4848. Grozinger CM, Sharabash NM, Whitfield CW, Robinson GE. 2003. Pheromone- mediated gene expression in the honey bee brain. Proc Natl Acad Sci USA 100:14519-14525.
Hamilton WD. 1963. The evolution of altruistic behavior. Amer Nat 97:354-356. Hamilton WD. 1964. The genetical evolution of social behaviour, I and II. J Theoret Biol 7:1-52.
Hartfelder K, Kostlin K, Hepperle C. 1995. Ecdysteroid-dependent protein-synthesis in caste-specific development of the larval honey-bee ovary. Roux Arch Dev Biol 205:73-80.
Hodin J, Riddiford LM. 1998. The ecdysone receptor and ultraspiracle regulate the timing and progression of ovarian morphogenesis during Drosophila metamorphosis. Dev Genes Evol 208:304-317.
Hoover SER, Keeling CI, Winston ML, Slessor KN. 2003. The effect of queen pheromones on worker honey bee ovary development. Naturwissenschaften 90:477- 480.
Hunt GJ, Amdam GV, Schlipalius D et al. 2007. Behavioral genomics of honeybee foraging and nest defense. Naturwissenschaften 94:247-267.
Jensen LJ, Saric J, Bork P. 2006. Literature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet 7:119-129.
Jenssen TK, Laegreid A, Komorowski J, Hovig E. 2001. A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 28:21-28. Jeong H, Mason SP, Barabasi AL, Oltvai ZN. 2001. Lethality and centrality in protein networks. Nature 411:41-42.
Kocher SD, Ayroles JF, Stone EA, Grozinger CM. 2010. Individual variation in pheromone response correlates with reproductive traits and brain gene expression in worker honey bees. Plos One 5.
LaFever L, Drummond-Barbosa D. 2005. Direct control of germline stem cell division and cyst growth by neural insulin in Drosophila. Science 309:1071-1073. Le Conte Y, Hefetz A. 2008. Primer pheromones in social hymenoptera. Annu Rev Entomol 53:523-542.
Lehmann L, Keller L. 2006. The evolution of cooperation and altruism - a general framework and a classification of models. J Evol Biol 19:1365-1376.
Magie CR, Parkhurst SA. 2005. Rho1 regulates signaling events required for proper Drosophila embryonic development. Dev Biol 278:144-154.
McQuillan HJ, Barron AB, Mercer AR. 2012. Age- and behaviour-related changes in the expression of biogenic amine receptor genes in the antennae of honey bees (Apis mellifera). J Comp Physiol A 198:753-761.
Munoz-Torres MC, Reese JT, Childers CP, Bennett AK, Sundaram JP, Childs KL, Anzola JM, Milshina N, Elsik CG. 2011. Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera. Nucleic Acids Res 39:D658-D662.
Newman MEJ. 2010. Networks : an introduction. Oxford: Oxford University Press. Paul RK, Takeuchi H, Kubo T. 2006. Expression of two ecdysteroid-regulated genes, Broad-Complex and E75, in the brain and ovary of the honeybee (Apis mellifera L.). Zool Sci 23:1085-1092.
Plettner E, Slessor KN, Winston ML, Robinson GE, Page RE. 1993. Mandibular gland components and ovarian development as measures of caste differentiation in the honey-bee (Apis mellifera L). J Insect Physiol 39:235-240.
Robinson GE, Fernald RD, Clayton DF. 2008. Genes and social behavior. Science 322:896-900.
Sasaki K, Nagao T. 2001. Distribution and levels of dopamine and its metabolites in brains of reproductive workers in honeybees. J Insect Physiol 47:1205-1216.
Schmelzer C, Lindner I, Rimbach G, Niklowitz P, Menke T, Doring F. 2008. Functions of coenzyme Q10 in inflammation and gene expression. BioFactors 32:179-183.
Seeley TD. 1985. Honeybee ecology: a study of adaptation in social life. Princeton: Princeton University Press.
Stephens M, Palakal M, Mukhopadhyay S, Raje R, Mostafa J. 2001. Detecting gene relations from Medline abstracts. Pac Symp Biocomput 6:483-495.
Sumner S. 2006. Determining the molecular basis of sociality in insects: progress, prospects and potential in sociogenomics. Ann Zool Fenn 43:423-442.
Tanaka ED, Hartfelder K. 2004. The initial stages of oogenesis and their relation to differential fertility in the honey bee (Apis mellifera) castes. Arthropod Struct Dev 33:431-442.
Thompson G, Hurd P, Crespi B. 2013. Genes underlying altruism. Biol Letters (in press).
Thompson GJ, Kucharski R, Maleszka R, Oldroyd BP. 2008. Genome-wide analysis of genes related to ovary activation in worker honey bees. Insect Mol Biol 17:657- 665.
Thompson GJ, Kucharski R, Maleszka R, Oldroyd BP. 2006. Towards a molecular definition of worker sterility: differential gene expression and reproductive plasticity in honey bees. Insect Mol Biol 15:637-644.
Toth AL, Robinson GE. 2007. Evo-devo and the evolution of social behavior. Trends Genet 23:334-341.
Toth AL, Varala K, Newman TC et al. 2007. Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science 318:441-444. Velthuis HH. 1970. Ovarian development in Apis mellifera worker bees. Entomol Exp Appl 13:377-394.
Vergoz V, Lim J, Oldroyd BP. 2012. Biogenic amine receptor gene expression in the ovarian tissue of the honey bee Apis mellifera. Insect Mol Biol 21:21-29.
Visscher PK. 1989. A quantitative study of worker reproduction in honey bee colonies. Behav. Ecol. Sociobiol. 25:247-254.
Wang Y, Amdam GV, Rueppell O, Wallrichs MA, Fondrk MK, Kaftanoglu O, Page RE. 2009. PDK1 and HR46 gene homologs tie social behavior to ovary signals. Plos One 4.
Wang Y, Kaftanoglu O, Siegel AJ, Page RE, Amdam GV. 2010. Surgically increased ovarian mass in the honey bee confirms link between reproductive physiology and worker behavior. J Insect Physiol 56:1816-1824.
Wang Y, Kocher SD, Linksvayer TA, Grozinger CM, Page RE, Amdam GV. 2012. Regulation of behaviorally associated gene networks in worker honey bee ovaries. J Exp Biol 215:124-134.
Warrior R. 1994. Primordial germ-cell migration and the assembly of the Drosophila embryonic gonad. Dev Biol 166:180-194.
Weinstock GM, Robinson GE, Gibbs RA, Worley KC, Evans JD, Maleszka R,
Robertson HM, Weaver DB. 2006. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443:931-949.
Wheeler DE, Buck N, Evans JD. 2006. Expression of insulin pathway genes during the period of caste determination in the honey bee, Apis mellifera. Insect Mol Biol 15:597-602.
Wiggins JE, Patel SR, Shedden KA, Goyal M, Wharram BL, Martini S, Kretzler M, Wiggins RC. 2010. NF!B promotes inflammation, coagulation, and fibrosis in the aging glomerulus. J Am Soc Nephrol 21:587-597.
Whitfield CW, Band MR, Bonaldo MF, Kumar CG, Liu L, Pardinas JR, Robertson HM, Soares MB, Robinson GE. 2002. Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee. Genome Res 12:555- 566.
Wilson MJ, Abbott H, Dearden PK. 2011. The evolution of oocyte patterning in insects: multiple cell-signaling pathways are active during honeybee oogenesis and are likely to play a role in axis patterning. Evol Dev 13:127-137.
Wilson MJ, Dearden PK. 2013. RNA localization in the honeybee (Apis mellifera) oocyte reveals insights about the evolution of RNA localization mechanisms. Dev Biol 375:193-201.
3. Discussion
The goal of this thesis was to take the well-founded conceptual framework of kin selection and apply it empirically to the honey bee in a case study for reproductive altruism. In Chapter 1, I outlined seven predicted characteristics of ‘genes for altruism’ and illustrated the progress with evidence in the honey bee to date. In Chapter 2, I addressed one prediction specifically – that genes for altruism should be environmentally sensitive – by generating gene networks from published microarray data. Specifically, these networks were constructed using worker gene expression differences upon exposure to queen pheromone, in an effort to better understand the genetic interactions underlying worker sterility and uncover genes involved in reproductive altruism. In this final discussion, I would like to outline some of the challenges, caveats, and future directions with using a brand new co-citation network approach to understanding honey bee sterility.
I predicted my meta-analysis approach of using multiple studies, each slightly varying in experimental design, would yield a set of recurring gene interactions that reveal the main pathway for reproductive regulation. Instead, I found that the gene networks had little genetic overlap, yet they all retained similar functions. If these low levels of gene overlap were due to strictly biological reasons, then this finding will lead to new theories of why and how workers evolved multiple gene networks to govern their reproduction. However, this overlap was likely due to a combination of biological and technical reasons, and now I would like to evaluate the approach of building co- citation networks from several microarrays using fruit fly homologs.