K- Nearest Neighbors (KNN)
5. Análisis de resultados
The present study provides a promising tool to investigate the biological role(s) of Parkin and the pathophysiology of PD in vivo on a molecular and cellular level. Given
the simplicity and genetic tractability of C. elegans, this model system might now be
used to uncover important aspect of PDR-1/Parkin function by a combination of biochemical, genetic and pharmacological methods.
The established model can now be used to dissect the role of PDR-1/Parkin in and its regulation by the UPR with the genetic tools available. Since many C. elegans
mutants deficient in known UPR/ERAD regulators or targets have been described, further genetic interactions can be studied directly. Double mutants of pdr-1(lg103)
h x
BR3205). Such experimental approaches would certainly reveal new genetic in
Since knock-down of pdr-1(lg103) by RNAi could not sufficiently suppress the
ypersensitivity towards proteotoxic stress conditions, an alternative strategy was
in vivo the toxic gain-of-misfunction mediated by pdr-
wit bp-1 and atf-6 loss-of-function mutants might help to further restrict PDR-
1/Parkin function to either PEK-1 and/or ATF-6 signalling. Additionally, double mutants of pdr-1(lg103) with mutants deficient in downstream genes of the UPR, like
ERAD components and chaperones, or later induced mediators of the cell death machinery, might help to identify the level of genetic interaction between IRE-1 and PDR-1/Parkin. Moreover, the system can be used to identify novel important genetic modifiers of toxicity and potential therapeutic drug targets. The severe phenotype of
pdr-1(lg103) mutants expressing α-synuclein A53T and its temperature- and dose-
dependency is perfectly suited to explore specific enhancers as well as suppressors of the PDR-1 ER-stress/α-synuclein induced proteotoxicity. Such screens could be rapidly performed in a genome-wide approach, using RNAi-feeding libraries in order to knock-down each single C. elegans gene in combination with tunicamycin
treatment or α-synuclein overexpression in the pdr-1(lg103) mutant background. For
this purpose, an appropriate strain has already been constructed into which the RNAi-hypersensitive rrf-3(pk1426) (Simmer et al., 2002) mutation has been
introduced by crossing (strain
teractions and might help to gain more insights into the affected cellular stress pathways. In addition, this might reveal further interactions and feedback-mechanism between the UPR and the cytosolic stress response that are important to completely understand the central role of PDR-1/Parkin.
h
1(lg103). Some attempts to ectopically express the corresponding in-frame deleted
ed strains (BR2789-2792 and
parkin
ORF in pdr-1 loss-of-function background, this time in order to induce proteotoxic
stress hypersensitivity, have been made. However, micro-injection of the pdr-1(lg103)
mutant genomic ORF (construct pBY1569) into pdr-1(lg101) mutant background did
not result in increased hypersensitivity against tunicamycin treatment or ectopic expression of mutant α-synuclein in the generat
BR3236-3239, respectively). Nevertheless, this is most likely caused by mosaic expression along with too low cellular levels of the corresponding protein PDR- 1(∆aa24-247), as judged by the expression of the co-injection marker sel-12::gfp. To
circumvent these experimental problems, a follow-up strategy was already initiated by generation of the constructs pBY1792 and pBY1793 (pdr-1 wild type and pdr- 1(lg103), respectively) which can be used to transform C. elegans by micro-particle
bombardment. This method should result in the isolation of strains carrying genomically integrated copies of the transgenes, thus preventing mosaic expression and ensuring sufficient cellular protein levels. Alternatively, this could also be done using a GFP-tagged mutant PDR-1 variant, in order to be able to compare intracellular localization of WT and mutant protein in vivo.
In addition, the respective pdr-1 wild type and mutant cDNAs have been
cloned into appropriate cell culture vectors in order to test hypersensitivity/resistance towards proteotoxic stress conditions. Since all pdr-1 variants are expressed in
human cells with the expected molecular weights, now, the stability of the different mutant PDR-1 proteins should be studied. Furthermore, the expressed proteins should also be used to address the question of residual E3 ligase activity of pdr-1 in-
frame deletion mutants.
In analogy, this nematode model can also be used for rapid transgenic analyses of human variants in vivo. Wild type parkin and different AR-JP
causing mutations can be introduced into different pdr-1 mutant backgrounds to
study the function of human Parkin and how mutations interfere with this. Differences in specific parkin mutations concerning their functional consequence (loss-of-function
or toxic gain-of-function) as well as their ability to form aggresomes have already been identified. This model might help to explore the pathogenic mechanisms conferred by specific parkin mutations and their contribution to the pathophysiology
of AR-JP. In addition, this might also help to understand the mechanisms of Parkin- mediated detoxification and its function in LB formation.
In order to elucidate the mechanism of PDR-1(∆aa24-247)/α-synuclein A53T mediated toxicity several experiments can be performed using the presented model. To analyze protein levels and folding of α-synuclein variant in pdr-1 mutant
background, first preliminary biochemical analyses have already been performed. However, total amounts of α-synuclein proteins variants have not been found altered in pdr-1(lg103) mutant background, compared to C. elegans wild type background.
Noticeably, separation of detergent-soluble (supernatant) and -insoluble (pellet) protein fractions showed lower levels of only α-synuclein A53T, but not WT, in the pellet fraction of pdr-1(lg103) mutants compared to N2 wild type background (Figure
47).
Figure 47. Analysis of α-synuclein Protein Expressed in pdr-1(lg103) Mutants.
Shown are Western blots of total worm lysates separated by centrifugation into detergent-soluble (supernatant) and -insoluble (pellet) fractions. Pellet fractions were solubilized using urea containing buffer. Western blots were stained with α-synuclein antibody 15G7, and GFP antibody as a loading control. The different
α-synuclein WT an
molecular weights observed for d A53T variants, arise from
Althou
different cloning strategies. Although lower protein levels for α-synuclein A53T in the pellet fraction of pdr-1(lg103) mutants can be seen, a coincident increase of α-synuclein A53T protein in the supernatant fraction cannot be determined due to protein overload.
gh these results have to be considered preliminary and thus have to be verified, they support the model of a Parkin-mediated detoxification mechanism through cytoprotective aggresome/LB formation. Additionally, these results are complete in line with the suggested neurotoxic role of specifically soluble α-synuclein species. However, aggregate formation of α-synuclein in pdr-1 mutant background
has to be studied in vivo, too. In order to characterize the nature and localization of
potential inclusions on a sub-cellular and molecular level, immuno-histological and biochemical studies should be performed. In addition, electron microscopy should be considered, to ultimately characterize aggregates.
A variety of other remaining question should be addressed using the presented model. Does co-expression of specific chaperones (e.g. Hsp70) suppress hypersensitivity of pdr-1(lg103) mutants towards proteotoxic stress? Are pdr-1(lg103)
mutants equally hypersensitive to expression of other known substrates of human Parkin? Are pdr-1 mutants or animals ectopically expressing α-synuclein affected by
specific PD-mimetics and inhibitors of protein turnover? Are mitochondria affected in
pdr-1 mutants or in animals overexpressing α-synuclein, and if so, due to a primary
or a secondary event? Are the interaction partners of PDR-1, identified from the yeast-two hybrid screen, physiologically relevant, and if so, what are their functions?
Although many questions are beyond the scope of this study and remain un- answered, the compelling model presented here will certainly help to shed light onto the molecular and cellular pathways involved into the pathophysiology of PD.