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E. FACTOR DE ZONA PARA LA ACELERACIÓN MÁXIMA DEL SUELO

V. RESULTADOS

2. DERIVAS DE PISO

Histone lysine methylation: a signature for chromatin function. TRENDS in Genetics, 19 (9), 629 – 639.

Squazzo S. L., Costa P. J., Lindstrom D. L., Kumer K. E., Simic R., Jennings J. L., Link A. J., Arndt K. M. and Hartzog G. A. (2002)

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo. EMBO Journal, 21 (7), 1764 – 1774.

Stavropoulos P., Blobel G. and Hoelz A. (2006)

Crystal structure and mechanism of human lysine-specific demethylase-1. Nature Structural & Molecular Biology, 13 (7), 626 – 632.

Steiner T., Kaiser J. T., Marinkovic S., Huber R. and Wahl M. C. (2002)

Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities. EMBO Journal, 21 (17), 4641 – 4653.

Stiller J. W. and Cook M. S. (2004)

Functional unit of the RNA polymerase II C-terminal domain lies within heptapeptide pairs. Eukaryotic Cell, 3 (3), 735 – 740.

Storoni L. C., McCoy A. J. and Read R. J. (2004)

Likelihood-enhanced fast rotation functions. Acta Crystallographica. Section D. Biological Crystallography, 60 (3), 432 – 438.

Strahl B. D. and Allis C. D. (2000)

The language of covalent histone modifications. Nature, 403 (6765), 41 – 45. Strahl B. D., Grant P. A., Briggs S. D., Sun Z. W., Bone J. R., Caldwell J. A., Mollah S., Cook R. G., Shabanowitz J., Hunt D. F. and Allis C. D. (2002) Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Molecular and Cellular Biology, 22 (5), 1298 – 1306. Sun Z. W. and Allis C. D. (2002)

Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature, 418 (6893), 104 – 108.

Svejstrup J. Q. (2002)

Chromatin elongation factors. Current opinion in genetics & development, 12 (2), 156 – 161, Review.

CH A P T E R I V : LI T E R A T U R E

Svejstrup J. Q. (2003)

Histones face the FACT. Science, 301 (5636), 1053 – 1055. Swanson M. S., Carlson M. and Winston F. (1990)

SPT6, an essential gene that affects transcription in Saccharomyces cerevisiae, encodes a nuclear protein with an extremely acidic amino terminus. Molecular and Cellular Biology, 10 (9), 4935 – 4941.

Swanson M. S., Malone E. A. and Winston F. (1991)

SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat. Molecular and Cellular Biology, 11 (6), 3009 – 3019.

Swanson M. S. and Winston F. (1992)

SPT4, SPT5 and SPT6 interactions: effects on transcription and viability in Saccharomyces cerevisiae. Genetics, 132 (2), 325 – 336.

Talbert P. B. and Henikoff S. (2006)

Spreading of silent chromatin: inaction at a distance. Nature Reviews. Genetics, 7 (10), 793 – 803.

Teng Q. (2005)

Structural Biology: Practical NMR applications. Springer Science + Business Media Inc., New York.

Thompson J. D., Higgins D. G. and Gibson T. J. (1994)

CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673 – 4680.

Trewick S. C., McLaughlin P. J. and Allshire R. C. (2005) Methylation: lost in hydroxylation? EMBO Reports, 6 (4), 315 – 320. Trojer P. and Reinberg D. (2006)

Histone lysine demethylases and their impact on epigenetics. Cell, 125, 213 – 217. Trigon S., Serizawa H., Conaway J. W., Conaway R. C., Jackson S. P. and Morange M. (1998)

Characterization of the residues phosphorylated in vitro by different C-terminal domain kinases. Journal of Biological Chemistry, 273 (12), 6769 – 6775.

CH A P T E R I V : LI T E R A T U R E

Turner B. M. (2005)

Reading signals on the nucleosome with a new nomenclature for modified histones. Nature Structural & Molecular Biology, 12, 110 – 112.

Verdecia M. A., Bowman M. E., Lu K. P., Hunter T. and Noel J. P. (2000) Structural basis for phosphoserine-proline recognition by group IV WW domains. Nature Structural & Molecular Biology, 7 (8), 639 – 643.

Vire E., Brenner C., Deplus R., Blanchon L., Fraga M., Didelot C., Morey L., Van Eynde A., Bernard D., Vanderwinden J. M., Bollen M., Esteller M., Di Croce L., de Launoit Y. and Fuks F. (2005)

The Polycomb group protein EZH2 directly controls DNA methylation. Nature, 439 (7078), 871 – 874.

Wada T., Orphanides G., Hasegawa J., Kim D. K., Shima D., Yamaguchi Y., Fukuda A., Hisatake K., Oh S., Reinberg D. and Handa H. (2000)

FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH. Molecular Cell, 5 (6), 1067 – 1072.

Wada T., Takagi T., Yamaguchi Y., Ferdous A., Imai T., Hirose S., Sugimoto S., Yano K., Hartzog G. A., Winston F., Buratowski S. and Handa H. (1998a) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes & Development, 12 (3), 343 – 356.

Wada T., Takagi T., Yamaguchi Y., Watanabe D. and Handa H. (1998b) Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II- dependent transcription in vitro. EMBO Journal, 17 (24), 7395 – 7403.

West M. L. and Corden J. L. (1995)

Construction and analysis of yeast RNA polymerase II CTD deletion and substitution mutations. Genetics, 140 (4), 1223 – 1233.

Whetstine J. R., Nottke A., Lan F., Huarte M., Smolikov S., Chen Z., Spooner E., Li E., Zhang G., Colaiacovo M. and Shi Y. (2006)

Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell, 125 (3), 467 – 481.

Winston F., Chaleff D. T., Valent B. and Fink G. R. (1984)

Mutations affecting Ty-mediated expression of the HIS4 gene of Saccharomyces cerevisiae. Genetics, 107 (2), 179 – 197.

Wittmeyer J. and Formosa T. (1997)

The Saccharomyces cerevisiae DNA polymerase alpha catalytic subunit interacts with Cdc68/Spt16 and with Pob3, a protein similar to an HMG1-like protein. Molecular and Cellular Biology, 17 (7), 4178 – 4190.

CH A P T E R I V : LI T E R A T U R E

Wood A., Krogan N. J., Dover J., Schneider J., Heidt J., Boateng M. A., Dean K., Golshani A., Zhang Y., Greenblatt J. F., Johnston M. and Shilatifard A. (2003)

Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter. Molecular Cell, 11 (1), 267 – 274.

Workman J. L. (2006)

Nucleosome displacement in transcription. Genes & Development, 20 (15), 2009 – 2017, Review.

Woychik N. A. and Young R. A. (1989)

RNA polymerase II subunit RPB4 is essential for high- and low-temperature yeast cell growth. Molecular and Cellular Biology, 9 (7), 2854 – 2859.

Wüthrich (1986)

NMR of proteins and nucleic acids. John Wiley & Sons Inc., 1986.

Wysocka J., Swigut T., Xiao H., Milne T. A., Kwon S. Y., Landry J., Kauer M., Tackett A. J., Chait B. T., Badenhorst P., Wu C. and Allis C. D. (2006)

A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature, 442 (7098), 86 – 90.

Xiao B., Jing C., Kelly G., Walker P. A., Muskett F. W., Frenkiel T. A., Martin S. R., Sarma K., Reinberg D., Gamblin S. J. and Wilson J. R. (2005)

Specificity and mechanism of the histone methyltransferase Pr-Set7. Genes & Development, 19 (12), 1444 – 1454.

Xiao B., Jing C., Wilson J. R., Walker P. A., Vasisht N., Kelly G., Howell S., Taylor I. A., Blackburn G. M. and Gamblin S. J. (2003)

Structure and catalytic mechanism of the human histone methyltransferase SET7/9. Nature, 421 (6923), 652 – 656.

Xu Y. X., Hirose Y., Zhou X. Z., Lu K. P. and Manley J. L. (2003)

Pin1 modulates the structure and function of human RNA polymerase II. Genes & Development, 17 (22), 2765 – 2776.

Yamada T., Yamaguchi Y., Inukai N., Okamoto S., Mura T. and Handa H. (2006)

P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation. Molecular Cell, 21 (2), 227 – 237.

CH A P T E R I V : LI T E R A T U R E

Yamaguchi Y., Wada T., Watanabe D., Takagi T., Hasegawa J. and Handa H. (1999a)

Structure and function of the human transcription elongation factor DSIF. Journal of Biological Chemistry, 274 (12), 8085 – 8092.

Yuryev A. and Corden J. L. (1996)

Suppression analysis reveals a functional difference between the serines in positions two and five in the consensus sequence of the C-terminal domain of yeast RNA polymerase II. Genetics, 143 (2), 661 – 671.

Yuryev A., Patturajan M., Litingtung Y., Joshi R. V., Gentile C., Gebara M. and Corden J. L. (1996)

The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins. Proceedings of the National Academy of Science, 93 (14), 6975 – 6980.

Zhang J. and Corden J. L. (1991)

Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit. Journal of Biological Chemistry, 266, 2290 – 2296.

Zhang X., Yang Z., Khan S. I., Horton J. R., Tamaru H., Selker E. U. and Cheng X. (2003)

Structural basis for the product specificity of histone lysine methyltransferases. Molecular Cell, 12 (1), 177 – 185.

Zhao J., Hyman L. and Moore C. (1999)

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiology and molecular biology Reviews, 63 (2), 405 – 445, Review.

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