2. Presentación y análisis de los datos
2.3. Impacto del ASPO en los estados de ánimo
nellosis caused by intentional contamination of restaurant salad bars. JAMA 278:389–395.
224. Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, Carniel E. 1999. Yersinia pestis, the cause of plague,
is a recently emerged clone of Yersinia pseudotuberculosis.
Proc Natl Acad Sci USA 96:14043–14048.
225. Bono JL, Smith TP, Keen JE, Harhay GP, McDaneld TG, Mandrell RE, Jung WK, Besser TE, Gerner-Smidt P, Bielaszewska M, Karch H, Clawson ML. 2012. Phylo-
geny of Shiga toxin-producing Escherichia coli O157 iso- lated from cattle and clinically ill humans. Mol Biol Evol
29:2047–2062.
226. Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA. 2011. Genome signatures of Escherichia coli O157:H7
isolates from the bovine host reservoir. Appl Environ Mi-
crobiol 77:2916–2925.
227. Leopold SR, Magrini V, Holt NJ, Shaikh N, Mardis ER, Cagno J, Ogura Y, Iguchi A, Hayashi T, Mellmann A, Karch H, Besser TE, Sawyer SA, Whittam TS, Tarr PI. 2009. A precise reconstruction of the emergence and
constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci
USA 106:8713–8718.
228. Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, Rance R, Baker S, Maskell DJ, Wain J, Dolecek C, Achtman M, Dougan G. 2008. High- throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet
40:987–993.
229. Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U’Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. 2004. Phylogenetic discovery bias in Bacillus anthracis
using single-nucleotide polymorphisms from whole-ge- nome sequencing. Proc Natl Acad Sci USA 101:13536– 13541.
230. Kenefic LJ, Beaudry J, Trim C, Daly R, Parmar R, Zanecki S, Huynh L, Van Ert MN, Wagner DM, Gra- ham T, Keim P. 2008. High resolution genotyping of
Bacillus anthracis outbreak strains using four highly muta-
ble single nucleotide repeat markers. Lett Appl Microbiol
46:600–603.
231. Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoama- nana BW, B ec ks tr om -S te rn be rg SM , A ch tm an M, Chanteau S, Keim P. 2011. Phylogeography and molecu-
lar epidemiology of Yersinia pestis in Madagascar. PLoS
Negl Trop Dis 5:e1319.
232. Hendriksen RS, Hyytia-Trees E, Pulsrikarn C, Pornru- angwong S, Chaichana P, Svendsen CA, Ahmed R, Mikoleit M. 2012. Characterization of Salmonella enterica
serovar Enteritidis isolates recovered from blood and stool specimens in Thailand. BMC Microbiol 12:92.
233. Barrett TJ, Gerner-Smidt P, Swaminathan B. 2006. In-
terpretation of pulsed-field gel electrophoresis patterns in foodborne disease investigations and surveillance. Food-
borne Pathog Dis 3:20–31.
234. de Valk HA, Meis JF, Bretagne S, Costa JM, Lasker BA, Balajee SA, Pasqualotto AC, Anderson MJ, Alca- zar-Fuoli L, Mellado E, Klaassen CH. 2009. Interlabora-
tory reproducibility of a microsatellite-based typing assay for Aspergillus fumigatus through the use of allelic ladders: proof of concept. Clin Microbiol Infect 15:180–187. 235. Aanensen DM, Spratt BG. 2005. The multilocus se-
q u e n c e t y p i n g n e t w o r k : m l s t . n e t . N u c l e i c A c i d s R e s
33:W728–W733.
236. Mavromatis K, Land ML, Brettin TS, Quest DJ, Cope- land A, Clum A, Goodwin L, Woyke T, Lapidus A, Klenk HP, Cottingham RW, Kyrpides NC. 2012. The
fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annota- tion. PLoS One 7:e48837.
237. Allard MW, Luo Y, Strain E, Pettengill J, Timme R, Wang C, Li C, Keys CE, Zheng J, Stones R, Wilson MR, Musser SM, Brown EW. 2013. On the evolutionary
history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004.
PLoS One 8:e55254.
238. Bielaszewska M, Prager R, Zhang W, Friedrich AW, Mellmann A, Tschape H, Karch H. 2006. Chromosomal
dynamism in progeny of outbreak-related sorbitol-fer- menting enterohemorrhagic Escherichia coli O157:NM.
Appl Environ Microbiol 72:1900–1909.
239. Jolley KA, Chan MS, Maiden MC. 2004. mlstdbNet-
distributed multi-locus sequence typing (MLST) data-
bases. BMC Bioinformatics 5:86.
240. Friedrich AW, Witte W, de Lencastre H, Hryniewicz W, Scheres J, Westh H. 2008. A European laboratory
network for sequence-based typing of methicillin-resistant
Staphylococcus aureus (MRSA) as a communication plat-
form between human and veterinary medicine—an up- date on SeqNet.org. Euro Surveill 13(19):pii–18862. 241. Oliveira DC, Milheirico C, Vinga S, de Lencastre H.
2006. Assessment of allelic variation in the ccrAB locus in methicillin-resistant Staphylococcus aureus clones. J
Antimicrob Chemother 58:23–30.
242. Struelens MJ. 1996. Consensus guidelines for appropriate
use and evaluation of microbial epidemiologic typing sys- tems. Clin Microbiol Infect 2:2–11.
243. Reddy TB, Riley R, Wymore F, Montgomery P, DeCa- prio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoo ln ik GK . 2 00 9. TB
database: an integrated platform for tuberculosis research.
Nucleic Acids Res 37:D499–D508.
244. Swaminathan B, Gerner-Smidt P, Ng LK, Lukinmaa S, Kam KM, Rolando S, Gutierrez EP, Binsztein N. 2006.
Building PulseNet International: an interconnected sys- tem of laboratory networks to facilitate timely public health recognition and response to foodborne disease out- breaks and emerging foodborne diseases. Foodborne Pathog
Dis 3:36–50.
245. CDC. 2003. Norovirus activity—United States, 2002.
MMWR Morb Mortal Wkly Rep 52:1–5.
246. Koopmans M, Vennema H, Heersma H, van Strien E, van Duynhoven Y, Brown D, Reacher M, Lopman B.
2003. Early identification of common-source foodborne virus outbreaks in Europe. Emerg Infect Dis 9:1136–1142. 247. Li Y, Gao L, Ding Y, Xu Y, Zhou M, Huang W, Jing Y, Li H, Wang L, Yu L. 2013. Establishment and applica-
tion of real-time quantitative PCR for diagnosing invasive Aspergillosis via the blood in hematological patients: tar-
geting a specific sequence of Aspergillus 28S-ITS2. BMC
Infect Dis 13:255.
248. van der Helm JJ, Sabajo LO, Grunberg AW, Morre SA, Speksnijder AG, de Vries HJ. 2012. Point-of-care test
for detectionofurogenital chlamydiain women shows
low sensitivity. A performance evaluation study in two clinics in Suriname. PLoS One 7:e32122.
249. Yakoob J, Abbas Z, Khan R, Naz S, Ahmad Z, Islam M, Awan S, Jafri F, Jafri W. 2012. Prevalence of non
Helicobacter pylori species in patients presenting with
dyspepsia. BMC Gastroenterol 12:3.
250. Chen EC, Miller SA, DeRisi JL, Chiu CY. 2011. Using
a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. J Vis Exp 50:e2536
251. Claas EC, Burnham C-AD, Mazzulli T, Templeton K, Topin F. 2013. Performance of the xTAG®gastroin- testinal pathogen panel, a multiplex molecular assay for
simultaneous detection ofbacterial,viral, andparasitic
causes of infectious gastroenteritis. J Microbiol Biotechnol
23:1041.
252. Bertelli C, Greub G. 2013. Rapid bacterial genome se-
quencing: methods and applications in clinical microbiol- ogy. Clin Microbiol Infect 19:803–813.
253. Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maranin- chi M, Trape JF, Koonin EV, La Scola B, Raoult D.
2012. Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect 18:1185– 1193.