5. Extracción de métricas
5.1.1. Modelos de color
the interactions they make with 17β-estradiol (cyan, yellow, respectively). The view is
the same as that in Figure 3A.
Figure 4. Analysis of the potential interactions between PXR and other endogenous
ligands (as well as dexamethasone) predicted by the PXR-estradiol complex reported here. A schematic view of the proximity of key side chains adjacent to estradiol is shown at top (S247, R410, S208), along with several residues near the 17-OH moiety. Known PXR agonists with 3-keto, 3-β-acetate, 3-β-hydroxy, and 3-α-hydroxy groups are all
predicted to form favorable interactions with S247; as shown, further favorable interactions may be formed with additional PXR residues, including H407, R413, D205, and K204.
Figure 5. Superpositions of the PXR-Estradiol structure on that of the GR-
Dexamethasone (DEX) complex (top), the LXR-25-epoxycholesterol (eChol) complex
(middle), and the CAR-5β-pregnane-3,20-dione (pregnane) complex (bottom). The view
is the same as that shown in Figure 4, and focusing on the ligand-binding pockets of the receptors.
Figure 4.
References
1. Bertilsson G, Heidrich J, Svensson K, Asman M, Jendeberg L, Sydow-Backman M, Ohlsson R, Postlind H, Blomquist P, Berkenstam A (1998) Proc Natl Acad Sci
95, 12208-13.
2. Blumberg B, Sabbagh W, Jr., Juguilon H, Bolado J, Jr., van Meter CM, Ong ES, Evans RM (1998) Genes & Development 12, 3195-205.
3. Goodwin B, Redinbo MR, Kliewer SA (2002) Annu Rev Pharmacol Toxicol 42,
1-23.
4. Kliewer SA, Moore JT, Wade L, Staudinger JL, Watson MA, Jones SA, McKee DD, Oliver BB, Willson TM, Zetterstrom RH, Perlmann T, Lehmann JM (1998)
Cell 92, 73-82.
5. Goodwin B, Gauthier KC, Umetani M, Watson MA, Lochansky MI, Collins JL, Leitersdorf E, Mangelsdorf DJ, Kliewer SA, Repa JJ (2003) Proc Natl Acad Sci
100, 223-8.
6. Goodwin B, Hodgson E, Liddle C (1999) Molecular Pharmacology 56, 1329-39.
7. Jones SA, Moore LB, Shenk JL, Wisely GB, Hamilton GA, McKee DD,
Tomkinson NC, LeCluyse EL, Lambert MH, Willson TM, Kliewer SA, Moore JT (2000) Mol Endocrinol 14, 27-39.
8. Krasowski MD, Yasuda K, Hagey LR, Schuetz EG (2005) Mol Endocrinol 19,
1720-39.
9. Lehmann JM, McKee DD, Watson MA, Willson TM, Moore JT, Kliewer SA (1998) J Clin Invest 102, 1016-23.
10. Moore LB, Goodwin B, Jones SA, Wisely GB, Serabjit-Singh CJ, Willson TM, Collins JL, Kliewer SA (2000) Proc Natl Acad Sci 97, 7500-2.
11. Moore LB, Parks DJ, Jones SA, Bledsoe RK, Consler TG, Stimmel JB, Goodwin B, Liddle C, Blanchard SG, Willson TM, Collins JL, Kliewer SA (2000) Journal
12. Carnahan VE, Redinbo MR (2005) Curr Drug Metab 6, 357-67.
13. Watkins RE, Davis-Searles PR, Lambert MH, Redinbo MR (2003) J Mol Biol
331, 815-28.
14. Watkins RE, Wisely GB, Moore LB, Collins JL, Lambert MH, Williams SP, Willson TM, Kliewer SA, Redinbo MR (2001) Science 292, 2329-33.
15. Chrencik JE, Orans J, Moore LB, Xue Y, Peng L, Collins JL, Wisely GB, Lambert MH, Kliewer SA, Redinbo MR (2005) Mol Endocrinol 19, 1125-34.
16. Watkins RE, Maglich JM, Moore LB, Wisely GB, Noble SM, Davis-Searles PR, Lambert MH, Kliewer SA, Redinbo MR (2003) Biochemistry 42, 1430-8.
17. Orans J, Teotico DG, Redinbo MR (2005) Mol Endocrinol 19, 2891-900.
18. Noble SM, Carnahan VE, Moore LB, Luntz T, Wang H, Ittoop OR, Stimmel JB, Davis-Searles PR, Watkins RE, Wisely GB, Lecluyse E, Tripathy A, McDonnell DP, Redinbo MR (2006) Biochemistry 45, 8579-8589.
19. Kliewer SA, Goodwin B, Willson TM (2002) Endocr Rev 23, 687-702.
20. Brzozowski AM, Pike ACW, Dauter Z, Hubbard RE, Bonn T, Engstrom O, Ohman L, Greene GL, Gustafsson J-A, Carlquist M (1997) Nature 389, 753-758.
21. Bledsoe RK, Montana VG, Stanley TB, Delves CJ, Apolito CJ, McKee DD, Consler TG, Parks DJ, Stewart EL, Willson TM, Lambert MH, Moore JT, Pearce KH, Xu HE (2002) Cell 110, 93-105.
22. Mi LZ, Devarakonda S, Harp JM, Han Q, Pellicciari R, Willson TM, Khorasanizadeh S, Rastinejad F (2003) Mol Cell 11, 1093-100.
23. Shan L, Vincent J, Brunzelle JS, Dussault I, Lin M, Ianculescu I, Sherman MA, Forman BM, Fernandez EJ 2004 Mol Cell 16, 907-17.
24. Suino K, Peng L, Reynolds R, Li Y, Cha JY, Repa JJ, Kliewer SA, Xu HE (2004)
Mol Cell 16, 893-905.
25. Williams S, Bledsoe RK, Collins JL, Boggs S, Lambert MH, Miller AB, Moore J, McKee DD, Moore L, Nichols J, Parks D, Watson M, Wisely B, Willson TM (2003) J Biol Chem 278, 27138-43.
26. Xu RX, Lambert MH, Wisely BB, Warren EN, Weinert EE, Waitt GM, Williams JD, Collins JL, Moore LB, Willson TM, Moore JT (2004) Mol Cell 16, 919-28.
27. Binkowski TA, Naghibzadeh S, Liang J (2003) Nucleic Acids Res 31, 3352-5.
28. Ingraham HA, Redinbo MR (2005) Curr Opin Struct Biol 15, 708-15.
29. Frank C, Makkonen H, Dunlop TW, Matilainen M, Vaisanen S, Carlberg C (2005) J Mol Biol 346, 505-19.
30. Guo GL, Lambert G, Negishi M, Ward JM, Brewer HB, Jr., Kliewer SA, Gonzalez FJ, Sinal CJ (2003) J Biol Chem 278, 45062-71.
31. Kliewer SA, Willson TM (2002) J Lipid Res 43, 359-64.
32. Sonoda J, Chong LW, Downes M, Barish GD, Coulter S, Liddle C, Lee CH, Evans RM (2005) Proc Natl Acad Sci U S A 102, 2198-203.
33. Staudinger J, Liu Y, Madan A, Habeebu S, Klaassen CD (2001) Drug Metab Dispos 29, 1467-72.
34. Staudinger JL, Goodwin B, Jones SA, Hawkins-Brown D, MacKenzie KI, Latour A, Liu Y, Klaassen CD, Brown KK, Reinhard J, Willson TM, Koller BH, Kliewer SA (2001) Proc. Natl. Acad. Sci. USA.
35. Stedman CA, Liddle C, Coulter SA, Sonoda J, Alvarez JG, Moore DD, Evans RM, Downes M (2005) Proc Natl Acad Sci U S A 102, 2063-8.
36. Uppal H, Toma D, Saini SP, Ren S, Jones TJ, Xie W (2005) Hepatology 41, 168-
76.
37. Xie W, Radominska-Pandya A, Shi Y, Simon CM, Nelson MC, Ong ES, Waxman DJ, Evans RM (2001) Proc Natl Acad Sci U S A 98, 3375-3380.
38. Zhang J, Huang W, Qatanani M, Evans RM, Moore DD (2004) J Biol Chem 27,
49517-22.
39. Nolte RT, Wisely GB, Westin S, Cobb JE, Lambert MH, Kurokawa R, Rosenfeld MG, Willson TM, Glass CK, Milburn MV (1998) Nature 395, 137-43.
40. Navaza J, Saludjian P (1997) Methods Enz. 276A, 581-594.
41. Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL (1998) Acta Crystallographica Section D Biological Crystallography
54, 905-21.
42. Brünger AT (1993) Acta Crystallogr. D Biol. Crystallogr. 49, 24-36.
43. Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Acta Crystallogr. A 47,
110-119.