Presentación de los fondos a analizar

CCG: designed the study, analyzed the data and drafted the manuscript. CCG, AFA and LPH collected data. MVL, AC and CP provided necessary logistical support. CP and SFO designed the study, edited the manuscript for intellectual content and

provided critical comments on the manuscript. SFO also directed implementation and

Reference

Abe-Sandes, K., Wilson, A., Silva, J.R., Zago, M.A. (2004). Heterogeneity of the Y Chromosome in Afro-Brazilian Populations. Human Biology 76(1) 77-86. doi:10.1353/hub.2004.0014

Adhikari, K., Chacón-Duque, J.C., Mendoza-Revilla, J., Fuentes-Guajardo, M., Ruiz-Linares, A. (2017). The Genetic Diversity of the Americas. Annual

Review of Genomics and Human Genetics , 18(1), 277–296. doi:10.1146/annurev-genom-083115-022331

Amigo, J., Salas, A., Phillips, C., Carracedo, Á. (2008). SPSmart: Adapting population based SNP genotype databases for fast and comprehensive web access. BMC Bioinformatics 9:1–6. - SNP for ID Browser (available at http://spsmart.cesga.es/snpforid.php)

Amorim,C.E.G., Gontijo, C.C., Falcão-Alencar, G., Godinho, N.M.O., Toledo, R.C.P., Pedrosa, M.A.F., Luizon, M.R., Simões, A.L., Klautau-Guimãres, M.N., Oliveira, S.F. (2011). Migration in Afro-Brazilian Rural Communities: Crossing Demographic and Genetic Data. Human Biology 83 509-521. doi:10.3378/027.083.0405

Brasileiro, S., Sampaio, J.A.L. (2002). Sacutiaba e Riacho de Sacutiaba: uma comunidade negra rural no oeste baiano , in: Quilombos: Identidade Étnica e Territorialidade, E.C. O’Dwyer (Eds). Rio de Janeiro: Fundação Getúlio Vargas and Associação Brasileira de Antropologia, 2002, pp.83–108.

Cann H.M., Toma C., Cazes D., Legrand L., Morel M.F., Piouffre V., Bodmer L., Bodmer J., Bonne-Tamir W.F., Cambon-Thomsen B.A., et al. (2002). A human genome diversity cell line panel. Science 296, 261–262.

doi:10.1126/science.296.5566.261b

Cardena, M.M.S.G., Ribeiro-dos-Santos, A., Santos, S., Mansur, A.J., Pereira, A.C., Fridman, C. (2013). Assessment of the Relationship between Self-Declared

Ethnicity, Mitochondrial Haplogroups and Genomic Ancestry in Brazilian Individuals. PLoS ONE 8(4): e62005. doi:10.1371/journal.pone.0062005 Da Silva, V.R.R. (2012). Entre quilombos e palenques: um estudo antropológico

sobre políticas públicas de reconhecimento no Brasil e na Colômbia . Thesis

(PhD) - Faculty of Philosophy, Letters and Humanities, Postgraduate Program in Social Sciences, Universidade de São Paulo (USP).

DANE – Dirección Nacional de Estadística, 2015: http://www.dane.gov.co/index.php (accessed June 2019)

De Moura, R.R., Coelho, A.V.C., Balbino, V.Q., Crovella, S., Brandão, L.A.C. (2015). Meta-Analysis of Brazilian Genetic Admixture and Comparison with Other Latin America Countries. American Journal of Human Biology 27 674–680.

doi:10.1002/ajhb.22714

Elhaik, E., Tatarinova, T., Chebotarev, D., Piras, I. S., Maria Calò, C., … Wells, R.S. (2014). Geographic population structure analysis of worldwide human populations infers their biogeographical origins. Nature Communications , 5(1). doi:10.1038/ncomms4513

Etnoterritorios - Universidad Javeriana & AECID (Agencia Española de Cooperación Internacional para el Desarrollo), 2006 – www.etnoterritorios.org (accessed June 2019)

Evanno, G., Regnaut, S., Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol Ecol. 14(8):2611–20.

Excoffier, L., Lischer, H.E.L. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular

Ecology Resources 10: 564-567.

FCP – Fundação Cultural Palmares: http://www.palmares.gov.br, 2017 (accessed June 2019)

Fondevila, M., Phillips, C., Santos, C., Freire-Aradas, A., Vallone, P.M., Butler, J.M., et al. (2013). Revision of the SNPforID 34-plex forensic ancestry test: Assay enhancements, standard reference sample genotypes and extended population studies. Forensic Sci Int Genet 7(1):63–74. doi: 10.1016/j.fsigen.2012.06.007

Freire-Aradas,A. , Ruiz, Y., Phillips, C., Maroñas, O., Söchtig, J., Tato, A.G., Dios, J. A., Cal,M.C., Silbiger, V.N., Luchessi, A.D., Chiurillo, M.A., Carracedo, A., Lareu, M.V. (2014). Exploring iris colour prediction and ancestry inference in admixed populations of South America. Forensic Science International:

Genetics 13 3–9. doi:10.1016/j.fsigen.2014.0

Garavito, G., Martinez, B., Builes, J.J., Aguirre, D., Mendoza, L., Afanador, C.H., Egea, E., Marrugo, J. (2015). Indels markers set and ancestry estimates in a population sample from Atlantic Department of Colombia. Forensic Science

International: Genetics Supplement Series 5 e177–e178. doi:10.1016/j.fsigss.2015.09.071

Giolo, S.R., Soler, J.M.P., Greenway, S.C., Almeida, M.A.A., De Andrade, M., Seidman, J.G., Seidman, C.E., Krieger, J.E., Pereira, A.C. (2011). Brazilian urban population genetic structure reveals a high degree of admixture. Eur J Hum Genet 20(1) 111-6. doi:10.1038/ejhg.2011.144.

Gomes, F. S. (2015). Mocambos e Quilombos. Uma história do campesinato negro no Brasil . São Paulo, SP: Claroenigma

Gómez-Carballa A., Pardo-Seco J., Brandini S., Achilli A., Perego U.A., Coble M.D., et al. (2018). The peopling of South America and the trans-Andean gene flow of the first settlers. Genome Res. 28(6):767–79.

Gontijo, C.C., Mendes, F.M., Santos, C.A., Klautau-Guimarães, M.N, Lareu, M.V., Carracedo, A., Phillips, C, Oliveria, S.F. (2018). Ancestry analysis in rural Brazilian populations of African descent. Forensic Sci Int Genet 160–6. doi:10.1016/j.fsigen.2018.06.018

Gontijo, C.C., Amorim, C.E.G., Godinho, N.M.O., Toledo, R.C.P., Nunes, A., Silva, W., Moura, M.M.F., Oliveira, J.C.C., Pagotto, R.C., Klautau-Guimarães, M.N., Oliveira, S.F. (2014). Brazilian Quilombos: A Repository of Amerindian Alleles.

American Journal of Human Biology , 26 142-150. doi:10.1002/ajhb.22501

Gonzáles-Andrade, F., Sánchez, D., González-Solórzano, J., Gascón, S., Martinez-Jarreta, B. (2007) Sex-specific genetic admixture of mestizos, amerindian kichwas, and afro-ecuadorans from Ecuador. Human Biology , v.79, no. 1, pp. 51-77.

Guauque-Olarte, S., Fuentes-Pardo, A.P., Cárdenas-Henao, H., Barreto, G. (2010) Genetic Structure and Diversity of Three Colombian Southwest Afrodescendent Populations Using 8 STR’s. Acta biol. Colomb ., 15 (2) 47-60. ISSN 1900-1649.

Heinz, T., Álvarez-Iglesias, V., Pardo-Seco, J., Taboada-Echalar, P., Gómez-Carballa, A., Torres-Balanza, A., Rocabado, O., Carracedo, A., Vullo, C., Salas, A. (2013). Ancestry analysis reveals a predominant Native American component with moderate European admixture in Bolivians. Forensic Science

International: Genetics 7 537–542. doi:10.1016/j.fsigen.2013.05.012

Hellenthal, G., Busby, G.B.J., Band, G., Wilson, J.F., Capelli, C., Falush, D., Myers, S. (2014). A Genetic Atlas of Human Admixture History. Science , 343(6172), 747–751. doi:10.1126/science.1243518

Hunter, J. D. (2007). "Matplotlib: A 2D Graphics Environment", Computing in Science & Engineering. 9 (3) 90-95. doi: 10.1109/MCSE.2007.55

Ibarra, A., Freire-Aradas, A., Martínez, M., Fondevila, M., Burgos, G., Camacho, M., Ostos, H., Suarez, Z., Carracedo, A., Santos, S., Gusmão, L. (2013). Comparison of the genetic background of different Colombian populations using the SNPforID 52plex identification panel. Int J Legal Med 128(1):19-25.

IBGE – Instituto Brasileiro de Geografia e Estatística, 2010: http://www.ibge.gov.br (accessed June 2019)

Jobling M.A., Gill, P. (2004). Encoded evidence: DNA in forensic analysis, Nature Reviews Genetics , 5 739–751. doi:10.1038/nrg1455.

Kopelman, N.M., Mayzel, J., Jakobsson, M., Rosenberg, N.A., Mayrose, I. (2015). CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources 15(5) 1179-1191. doi:10.1111/1755-0998.12387.

Landers J., Gómez P., Acuña J.P., Campbell C.J. (2015). Researching the history of slavery in Colombia and Brazil through ecclesiastical and notarial archives in: From Dust to Digital: Ten Years of the Endangered Archives Programme.

Kominko, M. (Editor). Open Book Publishers. pp. 259-292. https://www.jstor.org/stable/j.ctt15m7nhp.20

Li, J.Z., Absher, D.M., Tang, H.,Southwick, A.M., Casto, A.M., Ramachandran, S., Cann, H. M., Barsh, G.S., Feldman, M., Cavalli-Sforza, L.L., Myers, R.M. (2008). Worldwide human relationships inferred from genome-wide patterns of variation. Science 319 1100–1104.

Lins, T.C., Vieira, R.G., Abreu, B.S., Grattapaglia, D., Pereira, R.W. (2010). Genetic composition of Brazilian population samples based on a set of twenty-eight ancestry informative SNPs Am. J. Hum. Biol. 22 187–192. doi:10.1002/ajhb.20976

Machado, T.M.B.M. (2008). Ancestralidade em Salvador-BA. Masters Assay,

Biotechnology in Health and Investigative Medicine , Centro de Pesquisa

Gonçalo Moniz, FIOCRUZ, Bahia, Brazil.

Manta F.S.N., Pereira R., Vianna R., Araújo A.R.B., D.L.G. Gitaí, D.A. Silva, E.V. Wolfgramm, I.M. Pontes, J.I. Aguiar, M.O. Moraes, E.F. Carvalho, L. Gusmão,

Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels, PLoS ONE 8(9): e75145 (2013). doi:10.1371/journal.pone.0075145

Martin, A.R., Gignoux, C.R., Walters, R.K., Wojcik, G.L., Neale, B.M., Gravel, S.D., Mark, J., Bustamante, C.D., Kenny, E.E. (2017). Human Demographic History Impacts Genetic Risk Prediction across Diverse Populations. The American

Journal of Human Genetics . 100(4) 635-649. doi:10.1016/j.ajhg.2017.03.004.

Martínez, H., Rodríguez-Larralde, A., Izaguirre, M.H., de Guerra, D.C. (2007) Admixture estimates for Caracas, Venezuela, based on autosomal, Y-chromosome, and mtDNA Markers. Human Biology , v. 79, no. 2, pp. 201-213

Martínez-Marignac, V., Bertoni, B., Parra, E.J., Bianchi, N.O. (2004) Characterization of admixture in an urban sample from Buenos Aires, Argentina, using uniparentally and biparentally inherited genetic markers. Human Biology v. 76, no 4, pp. 543-557.

Mendes, F.M., Gontijo, C.C. Kpop: A Python package for population genetics analysis. Forensic Sci Int Genet Suppl Ser. 2017,6:e407–9.

Moreno, F., Freire-Aradas, A., Phillips, C., Fondevila, M., Carracedo, A., Lareu, M.V. (2014). SNP variation with latitude: Analysis of the SNPforID 52-plex markers in north, mid-region and south Chilean populations. Forensic

Science International: Genetics 10 12–16. doi:10.1016/j.fsigen.2013.12.009

Neme, S., Andrade, CO. (1987). Quilombo: forma de resistência. Proposta histórico-arqueológica. In: Insurreição Negra e Justiça (Eds. Huber, G., de

Souza F.B.). Rio de Janeiro, RJ: OAB.

Ossa, H., Aquino, J., Pereira, R., Ibarra, A., Ossa, R.H., Pérez, L.A., Granda, J.D., Lattig, M.C., Groot, H., Carvalho, E.F., Gusmão, L. (2016). Outlining the Ancestry Landscape of Colombian Admixed Populations. PLOS ONE 11(10):e0164414. doi:10.1371/journal.pone.0164414

Paiva, S.G. (2017) Fatores de risco para doenças cardiovasculares em quilombos

contemporâneos do Brasil Central : parâmetros demográficos, socioeconômicos, ancestralidade genética e saúde. Thesis (PhD) - Postgraduate Program in Anima Biology, Institute of Biology, University of Brasilia, Brazil.

Pedrosa, M.A.F. (2006). Composição Genética de Quatro Populações Remanescentes de Quilombo do Brasil com Base em Microssatélites e Marcadores de Ancestralidade. Masters Assay, Molecular Biology Graduate

Program, Institute of Biological Sciences, University of Brasília, Brazil.

Pena, S.D.J., Di Pietro, G., Fuchshuber-Moraes, M., Genro, J.P., Hutz, M.H., Kehdy, F.D.S.G., et al. (2011). The Genomic Ancestry of Individuals from Different Geographical Regions of Brazil Is More Uniform Than Expected. PLoS ONE 6(2) e17063. doi:10.1371/journal.pone.0017063

Phillips, C., Salas, A., Sánchez, J.J., Fondevila, M., Gómez-Tato, A., Álvarez-Dios, J., Calaza, M., Casares de Cal, M., Ballard, D., Lareu, M.V., Carracedo, A., The SNPforID Consortium. (2007). Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs. Forensic Science

International: Genetics 1, 273-280.

Phillips, C., Aradas, A. F., Kriegel, A. K., Fondevila, M., Bulbul, O., Santos, C., (…) Lareu, M. V. (2013). Eurasiaplex: A forensic SNP assay for differentiating European and South Asian ancestries. Forensic Science International:

Genetics 7(3), 359–366. doi:10.1016/j.fsigen.2013.02.010

Pinotti T., Bergström A., Geppert M., Bawn M., Ohasi D., Shi W., et al. (2019). Y Chromosome Sequences Reveal a Short Beringian Standstill, Rapid Expansion, and early Population structure of Native American Founders. Curr

Biol . 29: 1-9.

Pritchard, J.K., Stephens, M., Donnelly, P (2000). Inference of population structure using multilocus genotype data. Genetics 155(2):945–59.

Pritchard, J.K., Donnelly, P. (2001) Case-control studies of association in structured or admixed populations. Theor Popul Biol . 60(3):227–37.

Reich, D., Patterson, N., Campbell, D., Tandon, A., Mazieres, S., Ray, N., Parra, M.V., Rojas, W., Duque, C., Mesa, N., et al. (2012). Reconstructing Native American population history. Nature 488 (7411) 370–374. doi:10.1038/nature11258

Rondón, F., Osorio J.C., Peña, A.V., Garcés, H.A., Barreto, G. (2008). Diversidad Genética en Poblaciones Humanas en Dos Regiones Colombianas. 39 (2) 52-60 Universidad del Valle Cali, Colombia.

Rosenberg, N.A., Pritchard, J.K., Weber, J.L., Cann, H.M., Kidd, K.K., Zhivotovsky, L.A., Feldman, M.W. (2002). Genetic Structure of Human Populations.

Science , New Series, Vol. 298, No. 5602, 2381-2385

Rosenberg, N.A., Mahajan, S., Ramachandran, S., Zhao, C., Pritchard, J.K., Feldman, M.W. (2005). Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet . 1 70.

Ruiz-Linares, A., Adhikari, K., Acuña-Alonzo, V., Quinto-Sanchez, M., Jaramillo, C., Arias, W., Fuentes, M., Pizarro, M., Everardo, P., de Avila, F., et al. (2014). Admixture in Latin America: Geographic Structure, Phenotypic Diversity and Self-Perception of Ancestry Based on 7,342 Individuals. PLoS Genet 10(9) e1004572. doi:10.1371/journal.pgen.1004572.

Salzano, F. M., Sans, M. (2014). Interethnic admixture and the evolution of Latin American populations. Genetics and Molecular Biology, 37(1 suppl 1), 151–170. doi:10.1590/s1415-47572014000200003

Santos, C., Phillips, C., Fondevila, M., Daniel, R., van Oorschot, R. A. H., Burchard, E. G., … Lareu, M. V. (2016). Pacifiplex : an ancestry-informative SNP panel centred on Australia and the Pacific region. Forensic Science International:

Shriver, M.D., Kittles, R.A. (2004). Genetic ancestry and the search for personalized genetic histories. Nature Reviews Genetics 5 (2004) 611–618.

doi:10.1038/nrg1405.

Shriver, M.D., Smith, M.W., Jin, L., Marcini, A., Akey, J.M., Deka, R., Ferrell, R.E. (1997). Ethnic-affiliation estimation by use of population-specific DNA markers. Am J. Hum Genet , 60:957-964.

Silbiger, V.N., Hirata, M.H., Luchessi, A.D., Genvigir, F.D.V., Cerda, A., Rodrigues, A.C., et al. (2012). Differentiation of African Components of Ancestry to Stratify Groups in a Case–Control Study of a Brazilian Urban Population.

Genet Test Mol Biomarkers 16(6):524–30. doi:10.1089/gtmb.2011.0267

Tang H., Choudhry S., Mei R., Morgan M., Rodriguez-Cintron W., Burchard E.G., Risch N.J. (2007). Recent Genetic Selection in the Ancestral Admixture of Puerto Ricans. The American Journal of Human Genetics, 81 626-633. doi:10.1086/520769.

The 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature 526, 68-74. doi:10.1038/nature15393.

Urbano, L., Portilla, E.C., Muñoz, W., Sierra-Torres, C.H., Bolaños, H., Arboleda, Y., Aguirre, D.P., Mendoza, L., Carmona, V., Afanador, C.H., Salgar, M., Gusmão, L.,Builes, J.J. (2015). Ancestral genetic composition in a population of South Western Colombian using autosomal AIM-INDELS.

Forensic Science International: Genetics Supplement Series 5 e189–e190. doi:10.1016/j.fsigss.2015.09.076

Vila Real, R.N.S. (1996) Cultura e Currículo: Um estudo da escola Kalunga. Dissertatio (Masters) - Universidade Federal de Goiás, Goiânia, GO.

Xavier, C., Builes, J.J., Gomes, V., Ospino, J.M., Aquino, J., Parson, W., Amorim, A., Gusmão, L., Goios, A. (2015). Admixture and Genetic Diversity Distribution Patterns of Non-Recombining Lineages of Native American

Ancestry in Colombian Populations. PLoS One 16, 10(3):e0120155. doi:10.1371/journal.pone.0120155.

Wang, S., Ray, N., Rojas, W., Parra, M.V., Bedoya, G., Gallo C., Poletti G., Mazzoti G., Hill K., Hurtado A.M., et al. (2008). Geographic Patterns of Genome Admixture in Latin American Mestizos. PLoS Genet 4(3) e1000037. doi:10.1371/journal.pgen.1000037